[HTML][HTML] miRWalk: an online resource for prediction of microRNA binding sites
C Sticht, C De La Torre, A Parveen, N Gretz - PloS one, 2018 - journals.plos.org
C Sticht, C De La Torre, A Parveen, N Gretz
PloS one, 2018•journals.plos.orgmiRWalk is an open-source platform providing an intuitive interface that generates predicted
and validated miRNA-binding sites of known genes of human, mouse, rat, dog and cow. The
core of miRWalk is the miRNA target site prediction with the random-forest-based approach
software TarPmiR searching the complete transcript sequence including the 5'-UTR, CDS
and 3'-UTR. Moreover, it integrates results other databases with predicted and validated
miRNA-target interactions. The focus is set on a modular design and extensibility as well as …
and validated miRNA-binding sites of known genes of human, mouse, rat, dog and cow. The
core of miRWalk is the miRNA target site prediction with the random-forest-based approach
software TarPmiR searching the complete transcript sequence including the 5'-UTR, CDS
and 3'-UTR. Moreover, it integrates results other databases with predicted and validated
miRNA-target interactions. The focus is set on a modular design and extensibility as well as …
miRWalk is an open-source platform providing an intuitive interface that generates predicted and validated miRNA-binding sites of known genes of human, mouse, rat, dog and cow. The core of miRWalk is the miRNA target site prediction with the random-forest-based approach software TarPmiR searching the complete transcript sequence including the 5’-UTR, CDS and 3’-UTR. Moreover, it integrates results other databases with predicted and validated miRNA-target interactions. The focus is set on a modular design and extensibility as well as a fast update cycle. The database is available using Python, MySQL and HTML/Javascript Database URL: http://mirwalk.umm.uni-heidelberg.de.
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